# filelist

filenames: moc_AprFormat.cpp/moc_AprImporter.cpp
filetypes: ff
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/corelibs/U2Formats/U2Formats_autogen/B2KPAYO22P


filenames: moc_BallPlugin.cpp
filetypes: f
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/plugins_3rdparty/ball/ball_autogen/UVLADIE3JM


filenames: GTTestsAnnotationsQualifiers.cpp/GTTestsAnnotationsQualifiers.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins/GUITestBase/src/tests/common_scenarios/annotations/qualifiers


filenames: moc_MaExportConsensusTabFactory.cpp/moc_MaExportConsensusWidget.cpp
filetypes: ff
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/corelibs/U2View/U2View_autogen/HNZTA3AXQX


filenames: mfold
filetypes: d
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins/GUITestBase/src/tests/common_scenarios/external_tools


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins/repeat_finder/src
filetypes: fffffffffffffffffffffffffffffff
filenames:
  FindRepeatsDialog.cpp/FindRepeatsDialog.h/FindRepeatsTask.cpp/FindRepeatsTask.h/FindTandemsDialog.cpp/FindTandemsDialog.h/RFBase.cpp/RFBase.h/RFDiagonal.cpp/RFDiagonal.h/RFSArray.cpp/RFSArray.h/RFSArrayWK.cpp/RFSArrayWK.h/RFTaskFactory.cpp/RFTaskFactory.h/RF_BitMask.h/RF_SArray_TandemFinder.cpp/RF_SArray_TandemFinder.h/RF_SuffixArray.cpp/RF_SuffixArray.h/RepeatFinderPlugin.cpp/RepeatFinderPlugin.h/RepeatFinderTests.cpp/RepeatFinderTests.h/RepeatQuery.cpp/RepeatQuery.h/RepeatWorker.cpp/RepeatWorker.h/TandemQuery.cpp/TandemQuery.h


filenames: moc_CAP3Support.cpp/moc_CAP3SupportDialog.cpp/moc_CAP3SupportTask.cpp/moc_CAP3Worker.cpp
filetypes: ffff
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/plugins/external_tool_support/external_tool_support_autogen/VJ5F72OD7R


filenames: moc_KalignPairwiseAlignmentGUIExtensionFactory.cpp
filetypes: f
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/plugins/external_tool_support/external_tool_support_autogen/APEDAMOMWN


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/corelibs/U2Gui/src
filetypes: ffffffffffffffffffffffffffffffffffffffffffdd
filenames:
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dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/corelibs/U2Core/src/io
filetypes: fffffffffffffffffff
filenames:
  HttpFileAdapter.cpp/HttpFileAdapter.h/IOAdapter.cpp/IOAdapter.h/IOAdapterTextStream.cpp/IOAdapterTextStream.h/InputStream.h/LocalFileAdapter.cpp/LocalFileAdapter.h/OutputStream.h/RingBuffer.h/StringAdapter.cpp/StringAdapter.h/VFSAdapter.cpp/VFSAdapter.h/VirtualFileSystem.cpp/VirtualFileSystem.h/ZlibAdapter.cpp/ZlibAdapter.h


filetypes: dddddddddddddd
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/libs_3rdparty/qtscript/3rdparty/javascriptcore/JavaScriptCore

filenames:
  API/assembler/bytecode/bytecompiler/debugger/generated/interpreter/jit/parser/pcre/profiler/runtime/wtf/yarr


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/corelibs/U2View/src/ov_sequence/view_rendering
filetypes: ffffffffffff
filenames:
  DetViewMultiLineRenderer.cpp/DetViewMultiLineRenderer.h/DetViewRenderer.cpp/DetViewRenderer.h/DetViewSingleLineRenderer.cpp/DetViewSingleLineRenderer.h/PanViewRenderer.cpp/PanViewRenderer.h/SequenceViewAnnotatedRenderer.cpp/SequenceViewAnnotatedRenderer.h/SequenceViewRenderer.cpp/SequenceViewRenderer.h


filenames: MAFFT/clustalw/hmm3/kalign/primer3/sitecon/umuscle
filetypes: ddddddd
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins/GUITestBase/src/runnables/ugene/plugins_3rdparty


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/corelibs/U2Algorithm/src/registry
filetypes: fffffffffffffffffffff
filenames:
  AlignmentAlgorithmsRegistry.cpp/AlignmentAlgorithmsRegistry.h/CDSearchTaskFactoryRegistry.h/DnaAssemblyAlgRegistry.cpp/DnaAssemblyAlgRegistry.h/DnaAssemblyTask.cpp/DnaAssemblyTask.h/GenomeAssemblyRegistry.cpp/GenomeAssemblyRegistry.h/RepeatFinderTaskFactoryRegistry.cpp/RepeatFinderTaskFactoryRegistry.h/SecStructPredictAlgRegistry.cpp/SecStructPredictAlgRegistry.h/SecStructPredictTask.cpp/SecStructPredictTask.h/SplicedAlignmentTask.cpp/SplicedAlignmentTask.h/SplicedAlignmentTaskRegistry.cpp/SplicedAlignmentTaskRegistry.h/SubstMatrixRegistry.cpp/SubstMatrixRegistry.h


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/corelibs/U2View/src/ov_sequence/image_export
filetypes: fffffffff
filenames:
  ExportImagePainter.h/SequenceExportSettingsWidget.cpp/SequenceExportSettingsWidget.h/SequencePainter.cpp/SequencePainter.h/SingleSequenceImageExportController.cpp/SingleSequenceImageExportController.h/SingleSequenceImageExportTask.cpp/SingleSequenceImageExportTask.h


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/corelibs/U2Algorithm/src/misc
filetypes: fffffffffffffffffffff
filenames:
  BitsTable.cpp/BitsTable.h/CDSearchTaskFactory.h/DnaAssemblyMultiTask.cpp/DnaAssemblyMultiTask.h/DynTable.h/EnzymeModel.cpp/EnzymeModel.h/FindAlgorithm.cpp/FindAlgorithm.h/FindAlgorithmTask.cpp/FindAlgorithmTask.h/GenomeAssemblyMultiTask.cpp/GenomeAssemblyMultiTask.h/RepeatFinderSettings.h/RepeatFinderTaskFactory.h/RollingArray.h/RollingMatrix.h/SequenceContentFilterTask.cpp/SequenceContentFilterTask.h/SyncSort.h


filenames: moc_TreeViewer.cpp/moc_TreeViewerFactory.cpp/moc_TreeViewerTasks.cpp
filetypes: fff
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/corelibs/U2View/U2View_autogen/3VQLB7V4KJ


filenames: GTTestsMfold.cpp/GTTestsMfold.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins/GUITestBase/src/tests/common_scenarios/external_tools/mfold


filetypes: fffffffffff
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/corelibs/U2Lang/U2Lang_autogen/5GSWRITROI

filenames:
  moc_BaseNGSWorker.cpp/moc_ElapsedTimeUpdater.cpp/moc_MapDatatypeEditor.cpp/moc_NoFailTaskWrapper.cpp/moc_SchemaSerializer.cpp/moc_SimpleWorkflowTask.cpp/moc_WorkflowDebugStatus.cpp/moc_WorkflowIOTasks.cpp/moc_WorkflowRunTask.cpp/moc_WorkflowSettings.cpp/moc_WorkflowUtils.cpp


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins/GUITestBase/src/tests/regression_scenarios
filetypes: ffffffffffffffffffff
filenames:
  GTTestsRegressionScenarios_1001_2000.cpp/GTTestsRegressionScenarios_1001_2000.h/GTTestsRegressionScenarios_1_1000.cpp/GTTestsRegressionScenarios_1_1000.h/GTTestsRegressionScenarios_2001_3000.cpp/GTTestsRegressionScenarios_2001_3000.h/GTTestsRegressionScenarios_3001_4000.cpp/GTTestsRegressionScenarios_3001_4000.h/GTTestsRegressionScenarios_4001_5000.cpp/GTTestsRegressionScenarios_4001_5000.h/GTTestsRegressionScenarios_5001_6000.cpp/GTTestsRegressionScenarios_5001_6000.h/GTTestsRegressionScenarios_6001_7000.cpp/GTTestsRegressionScenarios_6001_7000.h/GTTestsRegressionScenarios_7001_8000.cpp/GTTestsRegressionScenarios_7001_8000.h/GTTestsRegressionScenarios_8001_9000.cpp/GTTestsRegressionScenarios_8001_9000.h/GTTestsRegressionScenarios_GitHub_1000_2000.cpp/GTTestsRegressionScenarios_GitHub_1000_2000.h


filenames: ui_NeighborJoinWidget.h
filetypes: f
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/plugins_3rdparty/phylip/phylip_autogen/include


filenames: moc_PhyMLDialogWidget.cpp/moc_PhyMLSupport.cpp/moc_PhyMLTask.cpp/moc_PhyMLTests.cpp
filetypes: ffff
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/plugins/external_tool_support/external_tool_support_autogen/DBQPVCRF2I


filenames: moc_ExcludeReasonDialog.cpp/moc_TestRunnerPlugin.cpp/moc_TestViewController.cpp
filetypes: fff
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/plugins/test_runner/test_runner_autogen/UVLADIE3JM


filetypes: fffffffffff
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/libs_3rdparty/qtscript/3rdparty/javascriptcore/JavaScriptCore/bytecode

filenames:
  CodeBlock.cpp/CodeBlock.h/EvalCodeCache.h/Instruction.h/JumpTable.cpp/JumpTable.h/Opcode.cpp/Opcode.h/SamplingTool.cpp/SamplingTool.h/StructureStubInfo.cpp


filenames: GTTestsBowtie2.cpp/GTTestsBowtie2.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins/GUITestBase/src/tests/common_scenarios/Assembling/bowtie2


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/corelibs/U2Gui/src/util/shared_db
filetypes: ffffffffff
filenames:
  CommonImportOptionsDialog.cpp/CommonImportOptionsDialog.h/EditConnectionDialog.cpp/EditConnectionDialog.h/ImportOptionsWidget.cpp/ImportOptionsWidget.h/ImportToDatabaseDialog.cpp/ImportToDatabaseDialog.h/ItemToImportEditDialog.cpp/ItemToImportEditDialog.h


filenames: ui_SiteconBuildDialog.h/ui_SiteconSearchDialog.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/plugins_3rdparty/sitecon/sitecon_autogen/include


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins/api_tests/src/core/datatype/udr
filetypes: ffff
filenames:
  RawDataUdrSchemaUnitTests.cpp/RawDataUdrSchemaUnitTests.h/UdrSchemaUnitTests.cpp/UdrSchemaUnitTests.h


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/libs_3rdparty/qtscript/script/api
filetypes: fffffffffffffffffffffffffffffffff
filenames:
  _qobject_p.h/qscriptable.cpp/qscriptable.h/qscriptable_p.h/qscriptclass.cpp/qscriptclass.h/qscriptclasspropertyiterator.cpp/qscriptclasspropertyiterator.h/qscriptcontext.cpp/qscriptcontext.h/qscriptcontext_p.h/qscriptcontextinfo.cpp/qscriptcontextinfo.h/qscriptengine.cpp/qscriptengine.h/qscriptengine_p.h/qscriptengineagent.cpp/qscriptengineagent.h/qscriptengineagent_p.h/qscriptextensioninterface.h/qscriptextensionplugin.cpp/qscriptextensionplugin.h/qscriptprogram.cpp/qscriptprogram.h/qscriptprogram_p.h/qscriptstring.cpp/qscriptstring.h/qscriptstring_p.h/qscriptvalue.cpp/qscriptvalue.h/qscriptvalue_p.h/qscriptvalueiterator.cpp/qscriptvalueiterator.h


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins/external_tool_support/src/custom_tools
filetypes: ffffffffff
filenames:
  CustomToolConfigParser.cpp/CustomToolConfigParser.h/ImportCustomToolsTask.cpp/ImportCustomToolsTask.h/ImportExternalToolDialog.cpp/ImportExternalToolDialog.h/LoadCustomExternalToolsTask.cpp/LoadCustomExternalToolsTask.h/RegisterCustomToolTask.cpp/RegisterCustomToolTask.h


filetypes: fffff
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/corelibs/U2Core/U2Core_autogen/3L7DNABINP

filenames:
  moc_ImportDirToDatabaseTask.cpp/moc_ImportDocumentToDatabaseTask.cpp/moc_ImportFileToDatabaseTask.cpp/moc_ImportObjectToDatabaseTask.cpp/moc_ImportToDatabaseTask.cpp


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins/external_tool_support/src/mrbayes
filetypes: ffffffff
filenames:
  MrBayesDialogWidget.cpp/MrBayesDialogWidget.h/MrBayesSupport.cpp/MrBayesSupport.h/MrBayesTask.cpp/MrBayesTask.h/MrBayesTests.cpp/MrBayesTests.h


filetypes: ffffdd
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins/GUITestBase/src/tests/common_scenarios/annotations

filenames:
  GTTestsAnnotations.cpp/GTTestsAnnotations.h/GTTestsCreateAnnotationWidget.cpp/GTTestsCreateAnnotationWidget.h/edit/qualifiers


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins/external_tool_support/src/bwa
filetypes: ffffffffffd
filenames:
  BwaMemWorker.cpp/BwaMemWorker.h/BwaSettingsWidget.cpp/BwaSettingsWidget.h/BwaSupport.cpp/BwaSupport.h/BwaTask.cpp/BwaTask.h/BwaWorker.cpp/BwaWorker.h/bwa_tests


filenames: moc_MsaImageExportTask.cpp
filetypes: f
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/corelibs/U2View/U2View_autogen/QG44OZOLL7


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins/external_tool_support/src/snpeff
filetypes: ffffffffffff
filenames:
  SnpEffDatabaseDelegate.cpp/SnpEffDatabaseDelegate.h/SnpEffDatabaseListModel.cpp/SnpEffDatabaseListModel.h/SnpEffDatabaseListTask.cpp/SnpEffDatabaseListTask.h/SnpEffSupport.cpp/SnpEffSupport.h/SnpEffTask.cpp/SnpEffTask.h/SnpEffWorker.cpp/SnpEffWorker.h


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins/external_tool_support/src/trimmomatic/steps
filetypes: ffffffffffffffffffffff
filenames:
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dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins_3rdparty/hmm2/src/u_search
filetypes: fffffffffffff
filenames:
  HMMSearchDialogController.cpp/HMMSearchDialogController.h/HMMSearchQDActor.cpp/HMMSearchQDActor.h/HMMSearchTask.cpp/HMMSearchTask.h/HMMSearchWorker.cpp/HMMSearchWorker.h/uhmmsearch.cpp/uhmmsearch.h/uhmmsearch_opt.cpp/uhmmsearch_opt.h/uhmmsearch_sse.cpp


filetypes: ffff
dirname:
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filenames:
  BuildDotPlotDialogFiller.cpp/BuildDotPlotDialogFiller.h/DotPlotDialogFiller.cpp/DotPlotDialogFiller.h


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/corelibs/U2View/src
filetypes: ffffffddddddddddddd
filenames:
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dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/corelibs/U2Formats/src
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filenames:
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filenames: moc_PairwiseAlignmentTask.cpp
filetypes: f
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/corelibs/U2Algorithm/U2Algorithm_autogen/SEA2MCJGWA


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/corelibs/U2Core/src/dbi
filetypes: ffffffffffffffffffffffffffffffffff
filenames:
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filenames: GTTestsSequenceEdit.cpp/GTTestsSequenceEdit.h/GTTestsSequenceEditMode.cpp/GTTestsSequenceEditMode.h
filetypes: ffff
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins/GUITestBase/src/tests/common_scenarios/sequence_edit


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/corelibs/U2Algorithm/src/temperature/rough
filetypes: ffff
filenames:
  RoughTmCalculator.cpp/RoughTmCalculator.h/RoughTmCalculatorCmdFactory.cpp/RoughTmCalculatorCmdFactory.h


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins/external_tool_support/src/clustalw
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filenames:
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filenames: moc_GUITestRunner.cpp
filetypes: f
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/plugins/GUITestBase/GUITestBase_autogen/FEK5ZPANIF


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/corelibs/U2Lang/src/support/external_script
filetypes: ffffff
filenames:
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filenames: GTTestsSequenceSelection.cpp/GTTestsSequenceSelection.h
filetypes: ff
dirname:
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filetypes: ffffff
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/corelibs/U2View/U2View_autogen/MFZXMDYAXQ

filenames:
  moc_BuildIndexDialog.cpp/moc_ConvertAssemblyToSamDialog.cpp/moc_DnaAssemblyDialog.cpp/moc_DnaAssemblyGUIExtension.cpp/moc_DnaAssemblyUtils.cpp/moc_GenomeAssemblyDialog.cpp


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins_3rdparty/ball/src/include/BALL/MATHS
filetypes: fffffffffffff
filenames:
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dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/ugeneui/ugeneui_autogen/include
filetypes: ffffffffffffffffffff
filenames:
  ui_AboutDialog.h/ui_AppSettingsDialog.h/ui_ColorThemeWindow.h/ui_CreateNewProjectWidget.h/ui_DirectoriesSettingsWidget.h/ui_DocumentFormatSelectorDialog.h/ui_DocumentProviderSelectorDialog.h/ui_ExportProjectDialog.h/ui_FormatSettingsWidget.h/ui_LogSettingsWidget.h/ui_MultipleSequenceFilesReadingMode.h/ui_NetworkSettingsWidget.h/ui_PluginViewerWidget.h/ui_ProjectViewWidget.h/ui_ResourceSettingsWidget.h/ui_SaveProjectDialog.h/ui_SequenceReadingModeSelectorDialog.h/ui_StatisticalReport.h/ui_TmpDirChangeDialog.h/ui_UserApplicationsSettingsWidget.h


filenames: GTTestsProjectRelations.cpp/GTTestsProjectRelations.h
filetypes: ff
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/plugins/GUITestBase/src/tests/common_scenarios/project/relations


filenames: ui_ConvertToSQLiteDialog.h
filetypes: f
dirname:
  /usr/src/debug/ugene-53.1-1.fc42.aarch64/redhat-linux-build/src/plugins/dbi_bam/dbi_bam_autogen/include


dirname: /usr/src/debug/ugene-53.1-1.fc42.aarch64/src/corelibs/U2View/src/ov_assembly
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.c/packet-zbee-zcl.h/packet-zbee-zdp-binding.c/packet-zbee-zdp-discovery.c/packet-zbee-zdp-management.c/packet-zbee-zdp.c/packet-zbee-zdp.h/packet-zbee.h/packet-zbncp.c/packet-zebra.c/packet-zep.c/packet-ziop.c/packet-ziop.h/packet-zmtp.c/packet-zrtp.c/packet-zvt.c/radius_dict.l/read_keytab_file.h/usb.c/x11-declarations.h/x11-enum.h/x11-extension-errors.h/x11-extension-implementation.h/x11-glx-render-enum.h/x11-keysym.h

filetypes:
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dirname: /usr/src/debug/wireshark-4.6.4-1.fc42.aarch64/plugins/epan/ethercat
filetypes: ffffffffff
filenames:
  packet-ams.c/packet-ecatmb.c/packet-ecatmb.h/packet-esl.c/packet-ethercat-datagram.c/packet-ethercat-datagram.h/packet-ethercat-frame.c/packet-ethercat-frame.h/packet-ioraw.c/packet-nv.c


dirname: /usr/src/debug/wireshark-4.6.4-1.fc42.aarch64/epan/crypt
filetypes: fffffffffff
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dirname: /usr/src/debug/yosyshq-abc-0.63-1.20260304git8e40154.fc42.aarch64/src/aig/hop
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dirname: /usr/src/debug/yosyshq-abc-0.63-1.20260304git8e40154.fc42.aarch64/src/proof/ssw
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dirname: /usr/src/debug/yosyshq-abc-0.63-1.20260304git8e40154.fc42.aarch64/src/bool/kit
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dirname: /usr/src/debug/yosyshq-abc-0.63-1.20260304git8e40154.fc42.aarch64/src/sat/satoko
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dirname: /usr/src/debug/yosyshq-abc-0.63-1.20260304git8e40154.fc42.aarch64/src/map/mpm
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dirname: /usr/src/debug/yosyshq-abc-0.63-1.20260304git8e40154.fc42.aarch64/src/opt
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